Detalhe da pesquisa
1.
LooplessFluxSampler: an efficient toolbox for sampling the loopless flux solution space of metabolic models.
BMC Bioinformatics;
25(1): 3, 2024 Jan 02.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38166586
2.
Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Appl Microbiol Biotechnol;
108(1): 310, 2024 Apr 25.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38662130
3.
The topology of genome-scale metabolic reconstructions unravels independent modules and high network flexibility.
PLoS Comput Biol;
18(6): e1010203, 2022 06.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35759507
4.
A probabilistic framework for the exploration of enzymatic capabilities based on feasible kinetics and control analysis.
Biochim Biophys Acta;
1860(3): 576-87, 2016 Mar.
Artigo
em Inglês
| MEDLINE
| ID: mdl-26721334
5.
Fast-SNP: a fast matrix pre-processing algorithm for efficient loopless flux optimization of metabolic models.
Bioinformatics;
32(24): 3807-3814, 2016 12 15.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27559155
6.
ll-ACHRB: a scalable algorithm for sampling the feasible solution space of metabolic networks.
Bioinformatics;
32(15): 2330-7, 2016 08 01.
Artigo
em Inglês
| MEDLINE
| ID: mdl-27153696
7.
Genome-scale metabolic modeling of the human milk oligosaccharide utilization by Bifidobacterium longum subsp. infantis.
mSystems;
9(3): e0071523, 2024 Mar 19.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38363147
8.
Microbial interactions and the homeostasis of the gut microbiome: the role of Bifidobacterium.
Microbiome Res Rep;
2(3): 17, 2023.
Artigo
em Inglês
| MEDLINE
| ID: mdl-38046822
9.
Modeling oxygen dissolution and biological uptake during pulse oxygen additions in oenological fermentations.
Bioprocess Biosyst Eng;
35(7): 1167-78, 2012 Sep.
Artigo
em Inglês
| MEDLINE
| ID: mdl-22349928
10.
Metabolic Modeling of Wine Fermentation at Genome Scale.
Methods Mol Biol;
2399: 395-454, 2022.
Artigo
em Inglês
| MEDLINE
| ID: mdl-35604565
11.
GRASP: a computational platform for building kinetic models of cellular metabolism.
Bioinform Adv;
2(1): vbac066, 2022.
Artigo
em Inglês
| MEDLINE
| ID: mdl-36699366
12.
Screening of COVID-19 cases through a Bayesian network symptoms model and psychophysical olfactory test.
iScience;
24(12): 103419, 2021 Dec 17.
Artigo
em Inglês
| MEDLINE
| ID: mdl-34786538
13.
Inferring composition and function of the human gut microbiome in time and space: A review of genome-scale metabolic modelling tools.
Comput Struct Biotechnol J;
18: 3897-3904, 2020.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33335687
14.
Genomic integration of unclonable gene expression cassettes in Saccharomyces cerevisiae using rapid cloning-free workflows.
Microbiologyopen;
9(3): e978, 2020 03.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31944620
15.
Engineering Saccharomyces cerevisiae for the Overproduction of ß-Ionone and Its Precursor ß-Carotene.
Front Bioeng Biotechnol;
8: 578793, 2020.
Artigo
em Inglês
| MEDLINE
| ID: mdl-33102463
16.
Expanding Metabolic Capabilities Using Novel Pathway Designs: Computational Tools and Case Studies.
Biotechnol J;
14(9): e1800734, 2019 Sep.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31140756
17.
Contextualized genome-scale model unveils high-order metabolic effects of the specific growth rate and oxygenation level in recombinant Pichia pastoris.
Metab Eng Commun;
9: e00103, 2019 Dec.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31720218
18.
Build Your Bioprocess on a Solid Strain-ß-Carotene Production in Recombinant Saccharomyces cerevisiae.
Front Bioeng Biotechnol;
7: 171, 2019.
Artigo
em Inglês
| MEDLINE
| ID: mdl-31380362
19.
From reconstruction to C4 metabolic engineering: A case study for overproduction of polyhydroxybutyrate in bioenergy grasses.
Plant Sci;
273: 50-60, 2018 Aug.
Artigo
em Inglês
| MEDLINE
| ID: mdl-29907309
20.
Formulation, construction and analysis of kinetic models of metabolism: A review of modelling frameworks.
Biotechnol Adv;
35(8): 981-1003, 2017 Dec.
Artigo
em Inglês
| MEDLINE
| ID: mdl-28916392